PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G151600.1
Common NameB456_011G151600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 142aa    MW: 16669.1 Da    PI: 10.8846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G151600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.3e-121146141
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaee 41
                        + y+GV+w+    +Wv+e+r+p  n+ + r++lg+f t ee
  Gorai.011G151600.1 11 PVYRGVCWRN-PRKWVSEVREP--NN-KSRIWLGTFPT-EE 46
                        68*******9.8******8887..44.6**********.76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-71146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-211271IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-161270IPR016177DNA-binding domain
SMARTSM003802.2E-121275IPR001471AP2/ERF domain
PROSITE profilePS5103216.2911269IPR001471AP2/ERF domain
CDDcd000184.77E-171371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MRKKFRETRH PVYRGVCWRN PRKWVSEVRE PNNKSRIWLG TFPTEEVVVL AHHVATIALR  60
GRSACSNFVD SAWNLPLLAF SNPKDIQKTT AKKRYKERRK HRDGERVYLD EEELFGTQRF  120
WANMAADMLM SPRSGHDGKW V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440211.13e-60PREDICTED: dehydration-responsive element-binding protein 1D isoform X1
RefseqXP_012440212.12e-60PREDICTED: dehydration-responsive element-binding protein 1D isoform X2
SwissprotQ9FJ935e-43DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0D2RMU81e-103A0A0D2RMU8_G
STRINGPOPTR_0012s13870.12e-43(Populus trichocarpa)
STRINGSolyc03g124110.1.11e-43(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-44C-repeat-binding factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]